MedBioInfo Applied Bioinformatics blog by Lara
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Applied Bioinformatics
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How to make a Quarto blog
code
In this post we are going to learn how to create a Quarto blog.
Lara Leal
Oct 6, 2025
Working with environments
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The different operating systems support different tools. In order to solve this issue, we can use environments, which wil help us make our bioinformatics work more…
Lara Leal
Oct 7, 2025
How to use and create containers
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Reproducibility in bioinformatics can be a big problem. The same code can be runned by you in you computer and give some results, and when given to someone else it gives…
Lara Leal
Oct 7, 2025
Nextflow Intro
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Workflow managers allow you to develop an automated pipeline from your scripts that can then be run on a variety of systems.
Lara Leal
Oct 8, 2025
Nf-Core
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Nf-core is a very active community around nextflow. All nf-core pipelines are open source and the source code is available on github. The pipelines are developed by…
Lara Leal
Oct 9, 2025
Nextflow RNAseq pipeline
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code
In a real-world biomedical example, we will implement a proof of concept workflow that:
Lara Leal
Oct 9, 2025
Visualize your data with ggplot
After you have finished your downstream analyses, you will want to visualize your results.
Lara Leal
Oct 10, 2025
Nf-Core RNAseq pipeline
info
code
Now that we have tested nextflow and nf-core, we want to use the pipeline in our own data.
Lara Leal
Oct 10, 2025
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